CoreArray
CoreArray Library Framework (v1.0)
| CoreArray project is to develop portable and scalable storage technologies for bioinformatics data, allowing parallel computing at the multicore and cluster levels. |
C++ library
| Download | http://sourceforge.net/projects/corearray/ |
R packages
| gdsfmt | an R interface for the CoreArray library | |
| http://cran.r-project.org/web/packages/gdsfmt/index.html | ||
| unit testing for gdsfmt | ||
| SNPRelate | a high-performance computing R package for relatedness and principal component analysis of SNP data | |
| http://cran.r-project.org/web/packages/SNPRelate/index.html | ||
| unit testing for SNPRelate | ||
| SeqArray | an R/Bioconductor package for big data management of genome-wide sequencing variants | |
| http://www.bioconductor.org/packages/devel/bioc/html/SeqArray.html |
Tutorials
| SNPRelate | online | Validation using PLINK v1.07 and EIGENSTRAT v3.0 (Validate.SNPRelate.r, Validate.SNPRelate.r.Rout) | ||||
| SeqArray | online |
Forums
| http://sourceforge.net/projects/corearray/forums |
Tools and Software
| EditGDS | download | A visual tool for browsing and editing GDS files |  |
Author
| Xiuwen Zheng | zhengx@u.washington.edu | |
| http://students.washington.edu/zhengx |
Others
| GENEVA | https://www.genevastudy.org/Accomplishments/software |
Copyright
| CoreArray is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License Version 3 as published by the Free Software Foundation. CoreArray is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License along with CoreArray. If not, see http://www.gnu.org/licenses/. |